Drosophila Heterochromatin Genome Project (DHGP):
» DHGP, Lawrence Berkeley National Laboratory, USA
D.melanogaster UCSC Genome Browser Gateway:
» University of California, Santa Cruz, USA
FlyMine, an integrated database for Drosophila & Anopheles genomics:
» University of Cambridge, United Kingdom
euGenes, Genomic Information for Eukaryotic Organisms, including Drosophila:
»
euGenes, Indiana University, USA
CluSTr protein sequence similarity analysis of Drosophila:
» CluSTr proteome analysis, EBI, UK
Homophila, Human Disease to Drosophila Gene Database:
»
Homophila, San Diego, USA
InterPro protein domain analysis of Drosophila:
» InterPro proteome analysis, EBI, UK
The McGill Drosophila melanogaster Genome Project:
»
McGill Drosophila Genome Project, Canada
Proteome analysis of Drosophila:
» Proteome analysis, EBI, UK
Panther protein classification system:
» Panther Protein Classification System, Applied Biosystems & Celera, USA
Drosophila melanogaster Exon Database (DEDB):
» DEDB, National University of Singapore
TaxoDros, the database on Taxonomy of Drosophilidae:
»
TaxoDros, University of Zurich, Switzerland
miRNA - Target Gene Prediction:
»
miRNA - Target Prediction, EMBL, Heidelberg, Germany
Drosophila Polymorphism Database:
»
Drosophila Polymorphism Database, Univ. Autònoma de Barcelona, Spain
BDGP Single Nucleotide Polymorphism (SNP) Project:
»
Berkeley Drosophila Genome Project, University of California, Berkeley, USA
FlySNP Project:
»
FlySNP, Austrian Academy of Sciences, Austria
Drosophila Population Genomic Project (DPGP):
» DPGP, University of California, Davis, USA
Drosophila Developmental Gene Expression Timecourse:
»
Drosophila Developmental Gene Expression Timecourse, Yale University, USA
Heidelberg FlyArray Expression Project:
»
Heidelberg FlyArray, ZMBH, Heidelberg, Germany
NHGRI Drosophila Genome Sequencing Proposals, Status of Sequencing:
»
National Human Genome Research Institute, Bethesda, MD, USA
AAA--Assembly/Alignment/Annotation of 12 Drosophila Genomes:
»
AAA, LBNL, USA
Whole genome comparative analysis of D. melanogaster and D. pseudoobscura:
» Whole genome analysis, LBNL, USA
D. pseudoobscura genome project:
» Human Genome Sequencing Center, Baylor College of Medicine, USA
Drosophila simulans and yakuba sequencing projects:
» DPGP, University of California, Davis, USA
D. simulans genome project:
» Genome Sequencing Center, Washington University, USA
D. yakuba genome project:
» Genome Sequencing Center, Washington University, USA
D. erecta genomic sequence trace archives:
» NCBI Trace Archives, USA
» Ensembl FTP Trace Repository, EBI, UK
D. melanogaster genomic sequence trace archives:
» NCBI Trace Archives, USA
» Ensembl FTP Trace Repository, EBI, UK
D. mojavensis genomic sequence trace archives:
» NCBI Trace Archives, USA
» Ensembl FTP Trace Repository, EBI, UK
D. pseudoobscura genomic sequence trace archives:
» NCBI Trace Archives, USA
» Ensembl FTP Trace Repository, EBI, UK
D. simulans genomic sequence trace archives:
» NCBI Trace Archives, USA
» Ensembl FTP Trace Repository, EBI, UK
D. virilis genomic sequence trace archives:
» NCBI Trace Archives, USA
» Ensembl FTP Trace Repository, EBI, UK
D. yakuba genomic sequence trace archives:
» NCBI Trace Archives, USA
» Ensembl FTP Trace Repository, EBI, UK
Fly GRID, The General Repository for Interaction Datasets
»
Fly GRID, Mount Sinai Hospital, Toronto, Canada
Drosophila PIMRider, Drosophila Protein Interaction Map
»
Drosophila PIMRider, Hybrigenics, Paris, France
Flynet, Drosophila Protein-protein Interactions
»
Flynet, Johns Hopkins University, Baltimore, MD, USA
GenePalette,
a tool for genome sequence visualization and navigation:
»
GenePalette, University of California, San Diego, USA
Genie Gene finder for Drosophila:
» Genie, USA
GRAIL Gene Finder for Drosophila:
»
GRAIL, USA
McPromoter Promoter Prediction for Drosophila:
» McPromoter, MIT, USA
Neural Network Promoter Prediction for Drosophila:
» Neural Network Promoter Prediction, USA
cis-analyst, to search the Drosophila genome for clusters of binding sites:
» cis-analyst, USA
Target Explorer, to identify clusters of transcription factor binding sites:
»
Target Explorer, Columbia University, New York, USA
Splice Site Prediction for Drosophila:
»
Splice Site Prediction, USA
TransTerm, a Translational Signal Database:
»
TransTerm, Dunedin, New Zealand
FlyBrain, an Online Atlas and Database of the Drosophila Nervous System:
»
FlyBrain, University of Freiburg, Freiburg, Germany
»
FlyBrain, University of Arizona, Tucson, USA
»
FlyBrain, NIBB, Okazaki, Japan
FlyEx, a Database of Segmentation Gene Expression in Drosophila:
»
FlyEx, St. Petersburg State Polytechnical University, Russia
»
FlyEx, Stony Brook University, USA
FlyTrap, a GFP Protein Trap Database:
»
FlyTrap, Yale University, USA
flytrap, a database of P{GAL4} enhancer traps and their expression in brains:
» flytrap, University of Edinburgh, UK
FlyView, a Drosophila Image Database:
»
FlyView, Muenster, Germany
GETDB, a Gal4 enhancer trap database:
»
GETDB, National Institute of Basic Biology, Okazaki, Japan
Patterns of gene expression in Drosophila embryogenesis:
» Gene expression database, BDGP, USA
Protein trap database, a GFP embryo expression database:
» Protein trap database, Villefranche-sur-mer, France
Scans of Bridges' original 1935 polytene drawings for D. melanogaster:
»
GEM Website, University of Hawaii, USA
The WWW Virtual Library--Drosophila:
»
Drosophila Virtual Library
Jfly, a data depository for the fly and other insects, with an emphasis for the Japanese-speaking fly community:
»
Jfly, University of Tokyo, Japan
Tracheal Database, information on tracheal development in Drosophila:
»
Tracheal Database, Switzerland
FlyPNS, embryonic and larval peripheral nervous system:
»
FlyPNS, USA
Three libraries of BAC clones are now available. These were all made from DNA of the same y1 ; cn1 bw1 sp1 stock as was used for the Berkeley Drosophila Genome Project P1 clones.
The libraries are BACR made for the BDGP by K. Osoegawa, A. Mammoser, and P. de Jong, BACE and BACH made for the EDGP by Alain Billaud at CEPH (Centre d'Etude du Polymorphisme Humaine) with funding provided by a MRC project grant to D.M. Glover and M. Ashburner.
BACR clones (18,432 clones in pBACe3.6; average clone size is 160-Kb) are available from BACPAC Resources at:
http://www.chori.org/bacpac/dromel98.htm
BACH and BACE clones (23,400 clones in pBeloBAC11; clone size ranges from 75 - 150-Kb) are available from MRC geneservice at:
http://www.hgmp.mrc.ac.uk/geneservice/reagents/products/descriptions/dros_BAC.shtml
As the P1 library is largely obsolete, the BDGP is discouraging the use of P1 clones. If there is a compelling scientific reason that a corresponding BAC is not sufficient, requests for P1 clones can be directed to the BDGP.
For additional information about the Berkeley Drosophila Genome Project see http://www.fruitfly.org.
EDGP cosmids are available from the MRC geneservice:
http://www.hgmp.mrc.ac.uk/geneservice/reagents/products/descriptions/drosophila.shtml.
Cosmids are available either singly or on high-density filters.
The members of the European Drosophila Genome mapping consortium are:
Supported by the Stimulation Action Programme of the European Community, with initial funding from the Fondation Schlumberger.
A complete set of YAC clones is maintained by Ian Duncan and clones may be requested from him.
Contact for YACs:
Fosmid Libraries from BACPAC Resources
Genomic fosmid libraries were constructed for the BDGP by Andreas Gnirke at Exelixis, Inc. (South San Francisco) from Drosophila erecta, D. pseudoobscura, D. virilis, and D. willistoni. The fosmid libraries are available from BACPAC Resources at:
http://bacpac.chori.org/drosofosmid.htm
Library from Novagen
Genomic library in 1BlueSTAR vector constructed from Drosophila virilis is available at:
http://www.novagen.com/Products/ProductDetail_NVG.asp?catNO=69657&CatID=1478
Drosophila Genomics Resource Center (DGRC)
Collects and distributes DNA clones, including vectors, cDNAs, and ESTs. More information is available at http://dgrc.cgb.indiana.edu/
Berkeley Drosophila Genome Project
The information is provided by BDGP. If you don't find the information you need here check http://www.fruitfly.org/about/materials/ for possible updates.
Drosophila Gene Collection (DGC)
Contact BACPAC Resources, Open Biosystems, MRC geneservice, or the DGRC for clones in DGCr1.0 or DGCr2.0.
EST Project cDNA Clones
Contact the DGRC for cDNA clones from the BDGP EST collection.
cDNA library aliquots
Aliquots from a number of the BDGP cDNA libraries are available from the labs on this list.Brian Oliver Laboratory
Testis cDNA clones and filters constructed by Justen Andrews in Brian Oliver's laboratory at the NIH are available from the MRC geneservice in the UK.
Ordering information can be found at http://www.hgmp.mrc.ac.uk/geneservice/reagents/products/descriptions/dros_cdna.shtml
Clontech
Clontech (BD Biosciences) offers D.melanogaster embryo and larva 5'-STRETCH cDNA libraries at http://www.clontech.com/products/cat/HTML/1186.shtml
Novagen
Novagen offers a Drosophila cDNA library at http://www.novagen.com/Products/ProductDetail_NVG.asp?catNO=69626
International Drosophila Array Consortium (INDAC)
An international consortium to collaborate in the development and aquisition of microarray resources for the benefit of the entire research community. More information is available at http://www.indac.net/
Affymetrix
The Affymetrix GeneChip Drosophila Genome Array based on Release 1 annotations can be obtained at http://www.affymetrix.com/products/arrays/specific/fly.affx
Eurogentec
The Eurogentec Ready-to-spot PCR sets for MicroArrays based on Release 2 annotations, DGC Release 1.0, and Sanger Center annotations can be obtained at http://www.eurogentec.be/code/en/page_02.asp?Page=377
FlyChip
FlyChip is a publicly funded project to provide a non-profit microarray resource for the UK Drosophila research community. More information is available at http://www.flychip.org.uk/
Drosophila Genomics Resource Center (DGRC)
Produces and distributes DNA microarray slides. More information is available at http://dgrc.cgb.indiana.edu/
A large collection of stocks at Indiana Univerisity, USA can be obtained at http://flystocks.bio.indiana.edu
BDGP/Baylor Gene Disruption Project
Information about ordering P{GT1}(BG), P{SuporP}(KG), and P{Epgy2}(EY) lines from Baylor College of Medicine, Texas, USA can be found at http://flypush.imgen.bcm.tmc.edu/pscreen/
DrosDel Project
Information about ordering isogenic deficiency lines at the University of Cambridge, UK can be found at http://www.drosdel.org.uk/
Exelixis Collection at Harvard Medical School
Information about ordering the Exelixis stocks at Harvard Medical School can be found at http://drosophila.med.harvard.edu/
GETDB--Gal4 Enhancer Trap Insertion Database
Information about ordering Gal4 enhancer trap lines generated and analyzed by NP Consortium from the Drosophila Genetic Resource Center in Kyoto, Japan can be found at http://flymap.lab.nig.ac.jp/~dclust/getdb.html
Kyoto Stock Center
Information about ordering P element insertion lines, deficiency, or duplication kits at the Kyoto Institute of Technology, Japan can be found at http://dbs.kit.ac.jp/stocks/
Szeged Stock Centre
Information about ordering P{lacW}, P{EP}, P{RS3}, and P{RS5} insertion lines at the University of Szeged, Hungary can be obtained at http://gen.bio.u-szeged.hu/gen/
Tucson Stock Center
Approximately 270 different Drosophila species at University of Arizona, USA can be obtained at http://stockcenter.arl.arizona.edu
Ehime Drosophila Species Stock Center of Japan
A collection of wild-type strains of D. melanogaster and strains of some 30 species can be found at http://kyotofly.kit.ac.jp/ehime/
FlyTrap Stock Collection
GFP protein trap lines from the FlyTrap project can be obtained at Yale University, USA at http://flytrap.med.yale.edu/
FlyView Stock Collection
Enhancer trap lines from the FlyView project can be obtained at University of Muenster, Germany at http://flyview.uni-muenster.de/
Japanese Laboratories
Stock lists from individual laboratories in Japan are available at http://www.grs.nig.ac.jp/fly/CENTER.e.html
Drosophila Gateway Vectors
A set of 68 Gateway-based vectors designed to express epitope-tagged proteins in Drosophila culture cells or flies, available at http://www.ciwemb.edu/labs/murphy/Gateway%20vectors.html
ATCC
The American Type Culture Collection (ATCC) provides Schneider's L-2 and L-2/M delta 2-3 cell lines and hybridomas at http://www.atcc.org/SearchCatalogs/CellBiology.cfm
Developmental Studies Hybridoma Bank
The Developmental Studies Hybridoma Bank at the University of Iowa offers hybridomas and antibodies at http://www.uiowa.edu/%7Edshbwww/
Drosophila Genomics Resource Center (DGRC)
Collects and distributes cell lines. More information is available at http://dgrc.cgb.indiana.edu/
Clontech
Clontech of BD Biosciences offers adult, embryo, and larva Poly A+ RNA at http://www.clontech.com/products/cat/HTML/1105.shtml
Drosophila RNAi Screening Center
The Drosophila RNAi screening center at Harvard Medical School provides high throughput RNAi screens. More information is available at http://flyrnai.org/RNAi_index.html
Open Biosystems
Open Biosystems provides the Drosophila RNAi Collection version 1.0, a collection of dsDNA constructs for generation of dsRNA, at http://www.openbiosystems.com/drosophila_rnai_collection.php?
MRC geneservice
MRC geneservice, in collaboration with Cyclacel Limited, offers a collection of 13,600 RNAi constructs in its Drosophila genome RNAi library. More information is available at http://www.hgmp.mrc.ac.uk/geneservice/reagents/products/descriptions/Dros_RNAi
EMBL Drosophila Transgenic Service
The EMBL Drosophila transgenic service injects embryos with your construct of interest. More information is available at http://www.embl-heidelberg.de/~voie
Duke University Non-Mammalian Model Systems Flyshop
The Duke University Non-Mammalian Model Systems Flyshop provides P-element transformation, dsRNA injection, embryo sorting, and inverse PCR services. More information is available at http://www.biology.duke.edu/model-system/services.htm
Genetic Services
Genetic Services provides the Drosophila community with services including transgenic production, injection work, genetic screening, stock creation, construct production and consulting. More information is available at http://www.geneticservices.com
Drosophila TILLING Project
The goal of Fly-TILL is to rapidly deliver to the Drosophila community EMS-induced mutations in requested genes via high-throughput reverse genetic screens. More information is available at http://tilling.fhcrc.org:9366/fly/
Kingshott Microinjection Services
Provides the Drosophila community with microinjection to produce transgenic flies and consultation. More information is available at http://www.gen.cam.ac.uk/~camfly
Last update 09-Sep-2004