FlyBase: Genome Sequence Download

FlyBase Genome Sequence Download

NOTE: Files downloaded from this page will need to be uncompressed using WinZip (PC) or Stuffit Expander (Mac) or Gunzip (Unix)

FTP Site: ftp://flybase.net/genomes/Drosophila_melanogaster/current/

Obtain Annotations in GFF format; Click [HERE] for information about GFF.

Obtain Sequences in FASTA format

For alternative ways to browse and query the Drosophila genome data see-

Drosophila Genome Overview .. Browse genomic sequence maps by chromosome arm

Annotation Query to perform complex queries and search by gene functions

For more information, please see the Release sequence and annotation notes.

Incremental updates (e.g Release 3.1) reflect changes in the annotations, NOT the genomic sequence

Send comments to us at flybase-help AT morgan.harvard.edu
FlyBase-NG uses Argos: A Replicable Genome infOrmation System

Select the Sequence Format, Datatype and Sequence Region below and then click on a Download button to download sequence for the selected region.



Sequence Format
FastA	GFF

Gene Features	Misc Features

Annotation +/- 2000bp	Transcript	Peptide	Pseudo Gene
Transposable Element	CDS	misc RNA	tRNA
	5' UTR	3' UTR	Intron
	Protein-coding Gene

Sequence Region

Euchromatin chromosome: X .. 2L .. 2R .. 3L .. 3R .. 4 .. or All Euchromatin