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Maps , chromosome location of genes and other molecular items

Genes , alleles, annotated genome, proteins, their function and expression patterns.

Genome Annotations & Sequences , clones, cDNAs, maps and bulk sequence data

Aberrations , chromosomal deficiencies, duplications and other rearrangements.

Transposons , transgene constructs and insertions

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Stocks with specific alleles and aberrations

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Drosophila Genomes Annotation & Sequences

D. melanogaster Release 4.1, Feb-05 and data list
D. melanogaster heterochromatin Release 3.2 Jan-05
D. pseudoobscura Release 1.04, Mar-04
Primary data updated 17-Feb-05

Annotated genes and genome data, from the FlyBase Chado Annotation Database

Search [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

Annotation search (all options)

: matches
Use wildcard (*) with search
Fly BLAST .. Sequence similarity search of Drosophila genomes
Batch download reports by ID or Batch download Sequences by ID .. enter a list of FlyBase IDs for reports in one batch, choose formats such as spreadsheet, and selected fields.
Search BDGP EST and DGC project cDNAs

Browse [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

GBrowse .. Generic Genome Browser for Annotated Genomes
- D. melanogaster Genome Overview
- D. pseudoobscura Genome Overview
Apollo .. Genome Annotation and Curation Tool
All Annotation reports
Protein Domain .. Predicted proteins grouped by InterPro domain by EBI
Drosophila Gene Collection (DGC)

Data [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

Choose Sequence (FastA), Features (GFF) and other bulk data

All Genomes
Drosophila_melanogaster Euchromatin Genome
Drosophila_melanogaster Heterochromatin Genome
Drosophila_pseudoobscura Genome
Genome data at ftp://flybase.net/genomes/
GFF v.3 format information
GAME schema in RELAX-NG
Other Sequence data: ftp://flybase.net/flybase/seqs/ or by http: seqs/
Other Sequence data at BDGP: http://www.fruitfly.org/sequence/download.html
Archived Genomic clones and sequences (BACs, P1s, cosmids, YACs, STS, BDGP P insertions)
BDGP Drosophila Gene Collection cDNA clones
Release 1.0 txt [ 411 kb, 25-Jul-01] .. Release 2.0 txt [ 89 kb, 22-Aug-03]
FlyBase Gene - DGC association table (DGC_FBgn.txt) txt [ 321 kb, 26-Mar-04]

Genome Projects [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

D. melanogaster Berkeley Drosophila Genome Project (BDGP)
D. pseudoobscura The Drosophila Genome Project at the HGSC, Baylor College of Medicine
D. pseudoobscura x D. melanogaster Whole Genome Comparative Analysis at LBL Berkeley Genome Pipeline

Documents [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

Current Release Notes
Annotation Release 4 Notes .. 4.0 Data Notes .. 4.1 Data Notes
Annotation Release 3 Notes .. 3.2 Update
Genomic Clones and STSs Section
Drosophila Resources--obtaining clones

Other files

sidebar in~ [ 2 kb] .. in [ 2 kb, 24-Nov-03]
release3 html~ [ 28 kb] .. html [ 20 kb] .. html [ 27 kb, 21-Jun-04]
index hdir~ [ 8 kb] .. hdir [ 8 kb, 22-Apr-04]
genomes-README html [ 5 kb, 12-Mar-05]
genome htaccess [ 1 kb, 12-Mar-05]
game.rng txt [ 27 kb, 27-Jan-05]
fbannquery hform~ [ 5 kb] .. hform [ 5 kb, 09-Aug-04]
dpse_release1.04 txt [ 4 kb, 14-Mar-05]
dpse_release1.0 txt [ 4 kb, 09-Nov-04]
dpse-release1 html [1016 b, 15-Nov-04]
download_sequences html~ [ 10 kb] .. old [ 16 kb] .. html [ 11 kb, 09-Apr-04]
dmel_release4.1 txt [ 10 kb, 20-Feb-05]
dmel_release4.0 txt [ 7 kb, 22-Nov-04]
dmel_release3.2.2 txt [ 6 kb, 25-Oct-04]
dmel_release3.2.1 txt [ 10 kb, 06-Aug-04]
dmel_prot_dpse txt [ 220 kb, 19-Jan-05]
dmel_het_release3.2b2 txt [ 2 kb, 14-Feb-05]
dmel_het_release3.2 txt [ 2 kb, 14-Nov-04]
dmel-release4 html [ 1 kb, 17-Dec-04]
dmel-release4-notes html [ 30 kb, 17-Dec-04]
data-release in~ [ 37 b] .. in [ 331 b, 17-Mar-04]
gff3 html [ 30 kb, 14-Nov-04]
dmel_release3.2.0 txt [ 8 kb] .. shtml [ 439 b, 18-Mar-04]
gff html [ 25 kb, 23-Feb-04]
dmel_release3.1.0d txt [ 6 kb, 01-Jan-04]
gamexml.dtd txt [ 12 kb, 26-Jul-03]
release html [ 30 kb, 17-Dec-04]