Drosophila Genome Annotation & Sequences

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• Annotation search (all options)
  : Any field Annotation ID Symbol Synonym Function Chromosome arm Cytologic location Sequence location Peptide length cDNA,EST,Oligo symbol Comments matches
  Use wildcard (*) with search
• Fly BLAST .. Sequence similarity search of Drosophila genome

• Batch download reports by ID or Batch download Sequences by ID .. enter a list of FlyBase IDs for reports in one batch, in various formats, including spreadsheet tables, genome sequence, and selected fields.

• Search BDGP EST and DGC project cDNAs

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• GBrowse .. Generic Genome Browser

• Drosophila Genome Overview .. Browse genomic sequence maps by chromosome arm

• Apollo .. Genome Annotation and Curation Tool

• All Annotation reports

• Gene-based Annotations .. Annotated reference gene sequence maps

• Protein Domain .. Predicted proteins grouped by InterPro domain by EBI

• Drosophila Gene Collection (DGC)

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• D. melanogaster Berkeley Drosophila Genome Project (BDGP)
• D. pseudoobscura The Drosophila Genome Project at the HGSC, Baylor College of Medicine
• D. pseudoobscura x D. melanogaster Whole Genome Comparative Analysis at LBL Berkeley Genome Pipeline

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• Annotation Release 3 Notes
  
• Release 3.2 Update Notes

• Genomic Clones and STSs Section

• Drosophila Resources--obtaining clones

Data      [Search] .. [Browse] .. [Genome Projects] .. [Documents] .. [Data]

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• FTP Chooser for Drosophila Genomic Sequence Download
  ftp://flybase.net/genomes/Drosophila_melanogaster/current/ -- Release 3.2 data
  ftp://flybase.net/genomes/Drosophila_melanogaster/dmel_RELEASE3-1/ -- Release 3.1 data including heterochromatic sequence not in rel. 3.2

• Annotation data
  

• Genome data by FTP and Rsync (see FTP Chooser for help)
  ftp://flybase.net/genomes/Drosophila_melanogaster/
  rsync://flybase.net/flybaseftp/genomes/Drosophila_melanogaster/
  
  • current/fasta/ .. DNA and protein sequences
  • current/gff/ .. annotation features in GFF format
  • current/xml-game/ .. annotation features in Game XML format
  • Annotation Game XML DTD
    
  • blastdb/ .. NCBI BLAST indexes to FASTA seqs

• Other Sequence data by FTP: ftp://flybase.net/flybase/seqs/
• Other Sequence data at BDGP: http://www.fruitfly.org/sequence/download.html
• Archived Genomic clones and sequences (BACs, P1s, cosmids, YACs, STS, BDGP P insertions)
• Transcript Reference Sequences (darts.seq) (GenBank format) & transcripts folder
• Transposon Sequences (FBtp.seq) (GenBank format) & transposons folder
• BDGP Drosophila Gene Collection Release 1.0 cDNA clones
• BDGP Drosophila Gene Collection Release 2.0 cDNA clones
• FlyBase Gene - DGC association table (DGC_FBgn.txt)
• Clone sequences folder including
  • EDGP cosmid STSs
  • EDGP BACs